Timeline



Jan 31, 2014:

3:50 PM Ticket #771 (test version number of libyat in shell tests that link against libyat) closed by Peter
fixed: Tests yat_lt_link_ifelse_test.sh and yat_m4_with_bam_test.sh also …
1:01 PM Changeset [3170] by Peter
in yat-hello-check test that versions agree. refs #771.
8:07 AM Ticket #782 (A less memory hungry Aligner) created by Peter
The utility::Aligner class is quite hungry wrt memory. Aligned two …

Jan 23, 2014:

12:15 PM Ticket #781 (reimplement Averagers as wrappers around boost::accumulators) created by Peter
Boost v1.36 (and newer) has accumulators, …

Jan 22, 2014:

8:41 AM Changeset [3169] by Peter
use private function create_gsl_vector rather than calling gsl …

Jan 21, 2014:

8:57 AM Changeset [3168] by Peter
improve docs
8:56 AM Changeset [3167] by Peter
avoid temporary variable

Jan 17, 2014:

3:23 AM Ticket #778 (throw OutBamFile::error from OutBamFile::write(const BamRead& read)) closed by Peter
fixed: (In [3166]) throw OutBamFile::error when OutBamFile::write fails. …
3:23 AM Changeset [3166] by Peter
throw OutBamFile::error when OutBamFile::write fails. closes #778
2:56 AM Ticket #780 (Aligner vertical and horizon gap) created by Peter
The Aligner(4) constructor takes argument named vertical_gap. It is …

Jan 15, 2014:

9:12 AM Changeset [3165] by Peter
mention samtools interface in doxygen output main page
9:07 AM Changeset [3164] by Peter
NEWS: record fix in r3163
9:04 AM Changeset [3163] by Peter
samwrite returns -1 if file is closed, so correct code to detect when …
9:01 AM Changeset [3162] by Peter
refs #778. samwrite returns -1 if file is closed, so correct code to …

Jan 14, 2014:

2:46 AM Changeset [3161] by Peter
fix docs so doxygen can parse correctly

Jan 13, 2014:

8:08 AM Ticket #775 (uncompressed OutBamFile) closed by Peter
fixed: (In [3160]) closes #775
8:08 AM Changeset [3160] by Peter
closes #775

Jan 9, 2014:

5:36 AM Changeset [3159] by Peter
fixed docs typo
2:56 AM Ticket #779 (Behaviour of BamHeader copy constructor) created by Peter
BamHeader does not own its underlying data but is only valid as long …
2:37 AM Changeset [3158] by Peter
improve docs for BamHeader?
2:28 AM Ticket #778 (throw OutBamFile::error from OutBamFile::write(const BamRead& read)) created by Peter
From BamFile?.cc: […]

Jan 6, 2014:

12:59 AM Changeset [3157] by Peter
NEWS: record that GetlineIterator? constructor is declared explicit …
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