Timeline
May 21, 2014:
- 4:04 PM Changeset [3232] by
- tidy up indentation, and minor code change
- 1:19 AM Changeset [3231] by
- tweak for clarity
May 20, 2014:
- 2:02 PM Changeset [3230] by
- typo
- 9:00 AM Changeset [3229] by
- translate variables when PACKAGE is not suitable as shell variable or …
May 18, 2014:
May 17, 2014:
- 4:38 PM Changeset [3228] by
- test for YAT_HEADER_ASSERT
- 4:12 AM Changeset [3227] by
- improve 'required' field. The tests use aclocal via the bootstrap …
May 14, 2014:
- 5:07 AM Ticket #795 (write a test for macro YAT_HEADER_ASSERT) created by
- 5:06 AM Changeset [3226] by
- New macro YAT_HEADER_ASSERT
May 12, 2014:
- 2:41 PM Ticket #794 (support for htslib) created by
- htslib has released a rc8 …
- 7:21 AM Changeset [3225] by
- make code more readable
- 6:30 AM Changeset [3224] by
- improve documentation; remove trailing WS
May 11, 2014:
- 3:26 PM Ticket #793 (File List shows full path) created by
- THe list of files on the 0.12.x official docs …
May 10, 2014:
- 4:29 AM Changeset [3223] by
- add pointer to boost::lockfree
May 8, 2014:
- 11:39 AM WikiStart edited by
- link to 0.12 docs (diff)
May 7, 2014:
- 5:37 AM Ticket #792 (BamRead::flag is not implemented) closed by
- fixed: (In [3222]) prefer tp declare functions alphabetically. Implement …
- 5:37 AM Changeset [3222] by
- prefer tp declare functions alphabetically. Implement …
- 5:04 AM Ticket #792 (BamRead::flag is not implemented) created by
May 6, 2014:
- 7:39 AM Changeset [3221] by
- deprecate BamRead::cigar(vector<uint32_t>) and provide a new function …
- 5:31 AM Changeset [3220] by
- bump version to 0.13pre
- 5:28 AM Changeset [3219] by
- fix typo
- 5:26 AM Changeset [3218] by
- New stable branch 0.12
- 5:25 AM Changeset [3217] by
- update copyright years
- 5:24 AM Changeset [3216] by
- fix svn targets so they work also in VPATH (alias doesn't work …
- 5:16 AM Changeset [3215] by
- Prepare 0.12-stable branch
- 5:10 AM ReleaseProcedure edited by
- (diff)
- 3:38 AM Ticket #791 (lock ostreams) created by
- I have a program in which the different threads send some output to …
May 5, 2014:
- 10:52 AM Ticket #789 (./configure CXXFLAGS="-g -O3") closed by
- fixed: (In [3214]) fixes #789. Change behavious of configure so that if …
- 10:52 AM Changeset [3214] by
- fixes #789. Change behavious of configure so that if INTERNAL_CXXFLAGS …
- 9:51 AM Changeset [3213] by
- three new cigar functions
- 9:00 AM Changeset [3212] by
- move Cigar defines to a separate file
- 8:38 AM Changeset [3211] by
- improve docs of CIGAR
- 8:10 AM Changeset [3210] by
- update copyright years
May 4, 2014:
- 3:52 PM Changeset [3209] by
- add missing source file and fix compilation error --without-samtools
- 4:56 AM Changeset [3208] by
- record r3207 in NEWS
- 4:55 AM Changeset [3207] by
- make constructor utility::Aligner(double, double) explicit
- 4:53 AM Changeset [3206] by
- mention new class SmithWaterman? in Aligner::smith_waterman
- 4:50 AM Changeset [3205] by
- implement new class SmithWaterman?
May 3, 2014:
- 5:23 PM Changeset [3204] by
- interface of new convenience class SmithWaterman? that uses the Aligner …
- 4:15 PM Ticket #785 (CIGAR functionality) closed by
- fixed: (In [3203]) improve docs of CIGAR. closes #785
- 4:15 PM Changeset [3203] by
- improve docs of CIGAR. closes #785
- 3:36 PM Changeset [3202] by
- make Cigar work also without bam.h, refs #785. #define YAT_CIGAR_ etc …
- 2:57 PM Changeset [3201] by
- add #define YAT_HAVE_LIBBAM to API and replace HAVE_LIBBAM accordingly.
- 1:36 PM Changeset [3200] by
- implement first version of CIGAR (refs #785). Note, this revision does …
Apr 30, 2014:
- 12:27 PM Ticket #790 (workaround for BamPairIterator::operator->) closed by
- fixed: (In [3199]) fixes #790
- 12:27 PM Changeset [3199] by
- fixes #790
Apr 29, 2014:
- 5:28 AM Changeset [3198] by
- refs #790. Prefer checking (in configure) whether boost work rather …
- 3:40 AM Changeset [3197] by
- refs #790. workaround for old boost
Apr 23, 2014:
- 11:17 PM Ticket #790 (workaround for BamPairIterator::operator->) created by
- As documented the operator doesn't work with older boost. Would it be …
Apr 22, 2014:
- 11:56 AM Changeset [3196] by
- avoid test code that won't compile with old boost.
- 11:46 AM Changeset [3195] by
- add first thin documentation for Aligner::Cigar. refs #785
- 11:24 AM Changeset [3194] by
- add missing file. see r3173
- 7:45 AM Changeset [3193] by
- document limitation due to bug in boost 1.48 (or older)
- 7:25 AM Changeset [3192] by
- docs: fix spelling and remove broken link.
- 7:24 AM Changeset [3191] by
- avoid compiler error (with gcc 4.4.6).
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