Timeline



May 23, 2014:

3:42 PM Ticket #796 (benjamini hochberg on unsorted range) closed by Peter
fixed: (In [3236]) BH correction on unsorted range. closes #796
3:42 PM Changeset [3236] by Peter
BH correction on unsorted range. closes #796
12:17 PM Changeset [3235] by Peter
fix some copy n paste in previous revision, and removed some includes …
12:08 PM Ticket #797 (yat/omic/algorithm.h is missing include) closed by Peter
fixed: (In [3234]) fixes #797
12:08 PM Changeset [3234] by Peter
fixes #797
11:47 AM Changeset [3233] by Peter
refs #797. Fix the bug in 0.11.x
8:00 AM Ticket #797 (yat/omic/algorithm.h is missing include) created by Peter
including yat/omic/algorithm.h causes compiler error […] The …
2:13 AM Ticket #796 (benjamini hochberg on unsorted range) created by Peter
[http://cbbp.thep.lu.se/~jari/documents/yat/namespacetheplu_1_1yat_1_1s

May 21, 2014:

4:04 PM Changeset [3232] by Peter
tidy up indentation, and minor code change
1:19 AM Changeset [3231] by Peter
tweak for clarity

May 20, 2014:

2:02 PM Changeset [3230] by Peter
typo
9:00 AM Changeset [3229] by Peter
translate variables when PACKAGE is not suitable as shell variable or …

May 18, 2014:

11:07 AM Ticket #795 (write a test for macro YAT_HEADER_ASSERT) closed by Peter
fixed

May 17, 2014:

4:38 PM Changeset [3228] by Peter
test for YAT_HEADER_ASSERT
4:12 AM Changeset [3227] by Peter
improve 'required' field. The tests use aclocal via the bootstrap …

May 14, 2014:

5:07 AM Ticket #795 (write a test for macro YAT_HEADER_ASSERT) created by Peter
5:06 AM Changeset [3226] by Peter
New macro YAT_HEADER_ASSERT

May 12, 2014:

2:41 PM Ticket #794 (support for htslib) created by Peter
htslib has released a rc8 …
7:21 AM Changeset [3225] by Peter
make code more readable
6:30 AM Changeset [3224] by Peter
improve documentation; remove trailing WS

May 11, 2014:

3:26 PM Ticket #793 (File List shows full path) created by Peter
THe list of files on the 0.12.x official docs …

May 10, 2014:

4:29 AM Changeset [3223] by Peter
add pointer to boost::lockfree

May 8, 2014:

11:39 AM WikiStart edited by Peter
link to 0.12 docs (diff)

May 7, 2014:

5:37 AM Ticket #792 (BamRead::flag is not implemented) closed by Peter
fixed: (In [3222]) prefer tp declare functions alphabetically. Implement …
5:37 AM Changeset [3222] by Peter
prefer tp declare functions alphabetically. Implement …
5:04 AM Ticket #792 (BamRead::flag is not implemented) created by Peter

May 6, 2014:

7:39 AM Changeset [3221] by Peter
deprecate BamRead::cigar(vector<uint32_t>) and provide a new function …
5:31 AM Changeset [3220] by Peter
bump version to 0.13pre
5:28 AM Changeset [3219] by Peter
fix typo
5:26 AM Changeset [3218] by Peter
New stable branch 0.12
5:25 AM Changeset [3217] by Peter
update copyright years
5:24 AM Changeset [3216] by Peter
fix svn targets so they work also in VPATH (alias doesn't work …
5:16 AM Changeset [3215] by Peter
Prepare 0.12-stable branch
5:10 AM ReleaseProcedure edited by Peter
(diff)
3:38 AM Ticket #791 (lock ostreams) created by Peter
I have a program in which the different threads send some output to …

May 5, 2014:

10:52 AM Ticket #789 (./configure CXXFLAGS="-g -O3") closed by Peter
fixed: (In [3214]) fixes #789. Change behavious of configure so that if …
10:52 AM Changeset [3214] by Peter
fixes #789. Change behavious of configure so that if INTERNAL_CXXFLAGS …
9:51 AM Changeset [3213] by Peter
three new cigar functions
9:00 AM Changeset [3212] by Peter
move Cigar defines to a separate file
8:38 AM Changeset [3211] by Peter
improve docs of CIGAR
8:10 AM Changeset [3210] by Peter
update copyright years

May 4, 2014:

3:52 PM Changeset [3209] by Peter
add missing source file and fix compilation error --without-samtools
4:56 AM Changeset [3208] by Peter
record r3207 in NEWS
4:55 AM Changeset [3207] by Peter
make constructor utility::Aligner(double, double) explicit
4:53 AM Changeset [3206] by Peter
mention new class SmithWaterman? in Aligner::smith_waterman
4:50 AM Changeset [3205] by Peter
implement new class SmithWaterman?

May 3, 2014:

5:23 PM Changeset [3204] by Peter
interface of new convenience class SmithWaterman? that uses the Aligner …
4:15 PM Ticket #785 (CIGAR functionality) closed by Peter
fixed: (In [3203]) improve docs of CIGAR. closes #785
4:15 PM Changeset [3203] by Peter
improve docs of CIGAR. closes #785
3:36 PM Changeset [3202] by Peter
make Cigar work also without bam.h, refs #785. #define YAT_CIGAR_ etc …
2:57 PM Changeset [3201] by Peter
add #define YAT_HAVE_LIBBAM to API and replace HAVE_LIBBAM accordingly.
1:36 PM Changeset [3200] by Peter
implement first version of CIGAR (refs #785). Note, this revision does …

Apr 30, 2014:

12:27 PM Ticket #790 (workaround for BamPairIterator::operator->) closed by Peter
fixed: (In [3199]) fixes #790
12:27 PM Changeset [3199] by Peter
fixes #790

Apr 29, 2014:

5:28 AM Changeset [3198] by Peter
refs #790. Prefer checking (in configure) whether boost work rather …
3:40 AM Changeset [3197] by Peter
refs #790. workaround for old boost

Apr 23, 2014:

11:17 PM Ticket #790 (workaround for BamPairIterator::operator->) created by Peter
As documented the operator doesn't work with older boost. Would it be …
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