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7:01 PM Changeset [3245] by Peter: avoid sorting entire range; instead let Percentiler be clever
6:37 PM Changeset [3244] by Peter: prefer range constructor
6:26 PM Changeset [3243] by Peter: speed up Percentiler when input range is unweighted and unsorted. Do …
4:49 PM Changeset [3242] by Peter: docs typo (and English)
4:34 PM Changeset [3241] by Peter: prefer range constructor over assigning with std::copy. remove dead code
3:31 PM Changeset [3240] by Peter: remove WS
3:30 PM Changeset [3239] by Peter: prefer range constructor over copy range with std::copy
12:27 PM Changeset [3238] by Peter: sort_index: add some compile tests, CONCEPT_ASSERTs, and add docs on …
7:49 AM Changeset [3237] by Peter: re-write sort_index so it's not limited to ranges of double but work …
3:56 AM Ticket #798 (output sorted bam buffer) created by Peter: A common pattern is to read a InBamFile, find pairs and process, and …

3:42 PM Ticket #796 (benjamini hochberg on unsorted range) closed by Peter: fixed: (In [3236]) BH correction on unsorted range. closes #796
3:42 PM Changeset [3236] by Peter: BH correction on unsorted range. closes #796
12:17 PM Changeset [3235] by Peter: fix some copy n paste in previous revision, and removed some includes …
12:08 PM Ticket #797 (yat/omic/algorithm.h is missing include) closed by Peter: fixed: (In [3234]) fixes #797
12:08 PM Changeset [3234] by Peter: fixes #797
11:47 AM Changeset [3233] by Peter: refs #797. Fix the bug in 0.11.x
8:00 AM Ticket #797 (yat/omic/algorithm.h is missing include) created by Peter: including yat/omic/algorithm.h causes compiler error […] The …
2:13 AM Ticket #796 (benjamini hochberg on unsorted range) created by Peter: [http://cbbp.thep.lu.se/~jari/documents/yat/namespacetheplu_1_1yat_1_1s …

4:04 PM Changeset [3232] by Peter: tidy up indentation, and minor code change
1:19 AM Changeset [3231] by Peter: tweak for clarity

2:02 PM Changeset [3230] by Peter: typo
9:00 AM Changeset [3229] by Peter: translate variables when PACKAGE is not suitable as shell variable or …

11:07 AM Ticket #795 (write a test for macro YAT_HEADER_ASSERT) closed by Peter: fixed

4:38 PM Changeset [3228] by Peter: test for YAT_HEADER_ASSERT
4:12 AM Changeset [3227] by Peter: improve 'required' field. The tests use aclocal via the bootstrap …

5:07 AM Ticket #795 (write a test for macro YAT_HEADER_ASSERT) created by Peter
5:06 AM Changeset [3226] by Peter: New macro YAT_HEADER_ASSERT

2:41 PM Ticket #794 (support for htslib) created by Peter: htslib has released a rc8 …
7:21 AM Changeset [3225] by Peter: make code more readable
6:30 AM Changeset [3224] by Peter: improve documentation; remove trailing WS

3:26 PM Ticket #793 (File List shows full path) created by Peter: THe list of files on the 0.12.x official docs …

5:37 AM Ticket #792 (BamRead::flag is not implemented) closed by Peter: fixed: (In [3222]) prefer tp declare functions alphabetically. Implement …
5:37 AM Changeset [3222] by Peter: prefer tp declare functions alphabetically. Implement …
5:04 AM Ticket #792 (BamRead::flag is not implemented) created by Peter

7:39 AM Changeset [3221] by Peter: deprecate BamRead::cigar(vector<uint32_t>) and provide a new function …
5:31 AM Changeset [3220] by Peter: bump version to 0.13pre
5:28 AM Changeset [3219] by Peter: fix typo
5:26 AM Changeset [3218] by Peter: New stable branch 0.12
5:25 AM Changeset [3217] by Peter: update copyright years
5:24 AM Changeset [3216] by Peter: fix svn targets so they work also in VPATH (alias ^{doesn't work …}
5:16 AM Changeset [3215] by Peter: Prepare 0.12-stable branch
5:10 AM ReleaseProcedure edited by Peter: (diff)
3:38 AM Ticket #791 (lock ostreams) created by Peter: I have a program in which the different threads send some output to …

10:52 AM Ticket #789 (./configure CXXFLAGS="-g -O3") closed by Peter: fixed: (In [3214]) fixes #789. Change behavious of configure so that if …
10:52 AM Changeset [3214] by Peter: fixes #789. Change behavious of configure so that if INTERNAL_CXXFLAGS …
9:51 AM Changeset [3213] by Peter: three new cigar functions
9:00 AM Changeset [3212] by Peter: move Cigar defines to a separate file
8:38 AM Changeset [3211] by Peter: improve docs of CIGAR
8:10 AM Changeset [3210] by Peter: update copyright years

3:52 PM Changeset [3209] by Peter: add missing source file and fix compilation error --without-samtools
4:56 AM Changeset [3208] by Peter: record r3207 in NEWS
4:55 AM Changeset [3207] by Peter: make constructor utility::Aligner(double, double) explicit
4:53 AM Changeset [3206] by Peter: mention new class SmithWaterman? in Aligner::smith_waterman
4:50 AM Changeset [3205] by Peter: implement new class SmithWaterman?

5:23 PM Changeset [3204] by Peter: interface of new convenience class SmithWaterman? that uses the Aligner …
4:15 PM Ticket #785 (CIGAR functionality) closed by Peter: fixed: (In [3203]) improve docs of CIGAR. closes #785
4:15 PM Changeset [3203] by Peter: improve docs of CIGAR. closes #785
3:36 PM Changeset [3202] by Peter: make Cigar work also without bam.h, refs #785. #define YAT_CIGAR_ etc …
2:57 PM Changeset [3201] by Peter: add #define YAT_HAVE_LIBBAM to API and replace HAVE_LIBBAM accordingly.
1:36 PM Changeset [3200] by Peter: implement first version of CIGAR (refs #785). Note, this revision does …

12:27 PM Ticket #790 (workaround for BamPairIterator::operator->) closed by Peter: fixed: (In [3199]) fixes #790
12:27 PM Changeset [3199] by Peter: fixes #790

5:28 AM Changeset [3198] by Peter: refs #790. Prefer checking (in configure) whether boost work rather …
3:40 AM Changeset [3197] by Peter: refs #790. workaround for old boost

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