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Aug 20, 2014:

8:55 AM Changeset [3302] by Peter

add test for BamRead::end(). Use samtools' bam_calend if …

7:50 AM Changeset [3301] by Peter

refs #810. minor corrections

7:43 AM Changeset [3300] by Peter

BAM_CBACK is not #defined in older versions of bam.h. refs #810

Aug 19, 2014:

8:41 AM Ticket #810 (Bam::end() doesn't work when cigar contains BAM_CEQUAL and BAM_CDIFF) created by Peter

Bam::end(void) is implemented using bam_calend, but that function …

Aug 18, 2014:

7:30 AM Ticket #809 (use zlib's pc file) created by Peter

zlib installs a pc file (just like gsl); we should use require field …

4:08 AM Changeset [3299] by Peter

fix some glitches in make release-tag-upload rule (found while …

Aug 8, 2014:

9:15 AM Ticket #807 (Yates' correction in Fisher) closed by Peter

fixed: (In [3298]) Yates' correction in Fisher's exact test. fixes #807.

9:15 AM Changeset [3298] by Peter

Yates' correction in Fisher's exact test. fixes #807.

Aug 6, 2014:

2:10 AM Changeset [3297] by Peter

fix mess up caused in latest merge (r3295).

Aug 5, 2014:

2:49 AM Ticket #808 (prefer using .private variable (when possible) in yat.pc) created by Peter

This ​blog post from one of …

Aug 4, 2014:

8:42 AM Ticket #807 (Yates' correction in Fisher) created by Peter

Fisher's only provide the exact calculation and chi². Often chi² …

Aug 1, 2014:

12:54 AM Ticket #806 (bam pileup) created by Peter

I have a class that I think is mature enough to be included in yat. It …

Jul 29, 2014:

3:38 AM Ticket #805 (installed libyat linked in before local libyat) created by Peter

I have yat 0.12pre installed in /home/peterJo/local and then …

Jul 25, 2014:

6:27 AM Changeset [3296] by Peter

bump version to 0.12.1pre

6:24 AM Changeset [3295] by Peter

merge release 0.12 into trunk

6:02 AM Milestone yat 0.12 completed

Many bugfixes and several new functionality including BamPairIterator?, …

6:01 AM SubversionCheckout edited by Peter

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6:00 AM WikiStart edited by Peter

(diff)

5:54 AM Changeset [3294] by Peter

tagging version 0.12

5:42 AM Changeset [3293] by Peter

update copyright years

5:39 AM Changeset [3292] by Peter

Preparing release 0.12