Timeline



Aug 23, 2014:

7:12 AM Ticket #811 (brokeln html link to trivial iterator) closed by Peter
fixed: (In [3309]) fixes #811
7:12 AM Changeset [3309] by Peter
fixes #811
3:00 AM Ticket #811 (brokeln html link to trivial iterator) created by Peter
We have an alias that link to …

Aug 21, 2014:

8:30 AM Changeset [3308] by Peter
fixed two more glitches in the new version of 'make …
6:41 AM Changeset [3307] by Peter
bump version to 0.12.2pre
6:37 AM Changeset [3306] by Peter
merge ptach release 0.12.1 into trunk
6:27 AM Milestone yat 0.12.1 completed
This is a bugfix release. It adds a test in configure to check if …
6:24 AM SubversionCheckout edited by Peter
(diff)
6:23 AM WikiStart edited by Peter
(diff)
6:22 AM Changeset [3305] by Peter
tagging version 0.12.1
6:07 AM Changeset [3304] by Peter
Preparing release 0.12.1
5:55 AM Ticket #810 (Bam::end() doesn't work when cigar contains BAM_CEQUAL and BAM_CDIFF) closed by Peter
fixed: (In [3303]) New macro YAT_FUNC_BAM_CALEND, which checks if function …
5:55 AM Changeset [3303] by Peter
New macro YAT_FUNC_BAM_CALEND, which checks if function bam_calend is …

Aug 20, 2014:

8:55 AM Changeset [3302] by Peter
add test for BamRead::end(). Use samtools' bam_calend if …
7:50 AM Changeset [3301] by Peter
refs #810. minor corrections
7:43 AM Changeset [3300] by Peter
BAM_CBACK is not #defined in older versions of bam.h. refs #810

Aug 19, 2014:

8:41 AM Ticket #810 (Bam::end() doesn't work when cigar contains BAM_CEQUAL and BAM_CDIFF) created by Peter
Bam::end(void) is implemented using bam_calend, but that function …

Aug 18, 2014:

7:30 AM Ticket #809 (use zlib's pc file) created by Peter
zlib installs a pc file (just like gsl); we should use require field …
4:08 AM Changeset [3299] by Peter
fix some glitches in make release-tag-upload rule (found while …

Aug 8, 2014:

9:15 AM Ticket #807 (Yates' correction in Fisher) closed by Peter
fixed: (In [3298]) Yates' correction in Fisher's exact test. fixes #807.
9:15 AM Changeset [3298] by Peter
Yates' correction in Fisher's exact test. fixes #807.

Aug 6, 2014:

2:10 AM Changeset [3297] by Peter
fix mess up caused in latest merge (r3295).

Aug 5, 2014:

2:49 AM Ticket #808 (prefer using .private variable (when possible) in yat.pc) created by Peter
This blog post from one of …

Aug 4, 2014:

8:42 AM Ticket #807 (Yates' correction in Fisher) created by Peter
Fisher's only provide the exact calculation and chi2. Often chi2

Aug 1, 2014:

12:54 AM Ticket #806 (bam pileup) created by Peter
I have a class that I think is mature enough to be included in yat. It …

Jul 29, 2014:

3:38 AM Ticket #805 (installed libyat linked in before local libyat) created by Peter
I have yat 0.12pre installed in /home/peterJo/local and then …

Jul 25, 2014:

6:27 AM Changeset [3296] by Peter
bump version to 0.12.1pre
6:24 AM Changeset [3295] by Peter
merge release 0.12 into trunk
6:02 AM Milestone yat 0.12 completed
Many bugfixes and several new functionality including BamPairIterator?, …
6:01 AM SubversionCheckout edited by Peter
(diff)
6:00 AM WikiStart edited by Peter
(diff)
5:54 AM Changeset [3294] by Peter
tagging version 0.12
5:42 AM Changeset [3293] by Peter
update copyright years
5:39 AM Changeset [3292] by Peter
Preparing release 0.12
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