Timeline
Nov 6, 2014:
- 2:16 PM Changeset [3346] by
- first version of Scheduler class. refs #800.
- 1:30 PM Ticket #818 (SegmentSet::insert_merge(range)) closed by
- fixed: (In [3345]) new function SegmentSet::insert_merge(first, last). closes #818
- 1:30 PM Changeset [3345] by
- new function SegmentSet::insert_merge(first, last). closes #818
- 1:09 PM Changeset [3344] by
- new function SegmentSet::insert_merge with hint. refs #818
- 6:31 AM Changeset [3343] by
- bumping version to 0.12.3pre
- 6:26 AM Changeset [3342] by
- merge 0.12.2 into trunk
- 6:18 AM Milestone yat 0.12.2 completed
- bugfix release - unexpected CIGAR - QuantileNormalizer? segfaults if …
- 6:18 AM SubversionCheckout edited by
- (diff)
- 6:17 AM WikiStart edited by
- (diff)
- 5:58 AM Changeset [3341] by
- tagging version 0.12.2
- 5:39 AM Changeset [3340] by
- Preparing release 0.12.2
- 12:43 AM Ticket #820 (Unexpected CIGAR) closed by
- fixed: (In [3339]) Fix problem that Aligner::member_ is not cleared to 'none' …
- 12:43 AM Changeset [3339] by
- Fix problem that Aligner::member_ is not cleared to 'none' before …
Nov 5, 2014:
- 1:10 PM Ticket #819 (SmithWaterman::operator()(4)) closed by
- fixed: (In [3338]) closes #819. Fixes docs.
- 1:10 PM Changeset [3338] by
- closes #819. Fixes docs.
- 7:35 AM Ticket #820 (Unexpected CIGAR) created by
- I use Smithwaterman to align a query against ref as below with gap=2, …
Nov 4, 2014:
- 9:03 AM Ticket #819 (SmithWaterman::operator()(4)) created by
- operator is declared as […] but if I call it with […] I get …
Oct 27, 2014:
- 2:46 PM Changeset [3337] by
- use better hint; remove ws
- 8:16 AM Ticket #818 (SegmentSet::insert_merge(range)) created by
- Is there any reason there is no insert_merge that takes a (sorted) range?
- 6:57 AM Ticket #817 (access misc text in BamHeader) created by
- Current interface (0.12) can only translate tid to chromosome number …
Oct 25, 2014:
- 1:27 AM Ticket #816 (create CigarIterator from Aligner::Cigar) closed by
- fixed: (In [3336]) closes #816
- 1:27 AM Changeset [3336] by
- closes #816
Oct 24, 2014:
- 2:27 AM Ticket #816 (create CigarIterator from Aligner::Cigar) created by
- Add iterator interface to Aligner::Cigar with functions: […] where …
Oct 23, 2014:
- 4:33 PM Ticket #806 (bam pileup) closed by
- fixed: (In [3335]) closes #806
- 4:33 PM Changeset [3335] by
- closes #806
- 3:26 PM Changeset [3334] by
- Avoid stopping at position one passed a pile, instead fast forward to …
- 2:26 PM Changeset [3333] by
- correct docs. refs #806
- 1:18 PM Changeset [3332] by
- In Pileup store reads in a std::list (rather than std::deque) to allow …
Oct 17, 2014:
- 1:45 AM Changeset [3331] by
- update to autoconf-archive 2014.10.15
Oct 14, 2014:
- 10:03 AM Changeset [3330] by
- update copyright years
Oct 12, 2014:
- 10:25 AM Changeset [3329] by
- new class CigarIterator? that can be used to (surprise) iterate over a …
Oct 10, 2014:
- 1:41 PM Changeset [3328] by
- avoid temporary variables; prefer initialization. refs #806
- 10:30 AM Changeset [3327] by
- redefine Pileup::const_iterator so it avoids reads that do not overlap …
Oct 8, 2014:
- 3:30 AM Changeset [3326] by
- use same variable name (p) in docs as in argument list
Oct 7, 2014:
- 3:44 AM Changeset [3325] by
- new functions phred and phred_inv that calculate phred scaled …
- 12:56 AM Changeset [3324] by
- grammar in comment
- 12:55 AM Changeset [3323] by
- prefer strcmp over generic std::equal
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