Timeline
Dec 1, 2014:
- 12:14 PM Ticket #809 (use zlib's pc file) closed by
- fixed: (In [3365]) Use pc from zlib and htslib when linking against those …
- 12:14 PM Changeset [3365] by
- Use pc from zlib and htslib when linking against those packages. …
Nov 25, 2014:
- 2:17 PM Changeset [3364] by
- describe htslib support in NEWS and README. refs #794
- 11:42 AM Changeset [3363] by
- improve docs. refs #794
- 11:41 AM Changeset [3362] by
- avoid temp variable. refs #794
Nov 24, 2014:
- 7:35 AM Changeset [3361] by
- remove superfluous namespace
- 2:22 AM Changeset [3360] by
- update copyright years
Nov 23, 2014:
- 1:05 PM Changeset [3359] by
- fix issues in OutBamFile::write. refs #794
- 8:02 AM Changeset [3358] by
- fix how to read from a hts_itr_t. refs #794
- 2:54 AM Changeset [3357] by
- refs #794. implement open and close functions
Nov 22, 2014:
- 2:34 PM Changeset [3356] by
- refs #794. make test/pileup.cc compile with htslib
- 2:17 PM Changeset [3355] by
- refs #794. implement BamRead::end() and BamRead::sequence() correctly …
- 12:59 PM Changeset [3354] by
- refs #794. fix configure test so it works with htslib.
- 11:26 AM Changeset [3353] by
- refs #794. First version that compiles against htslib. Alibi …
- 12:16 AM Changeset [3352] by
- implement BamHeader? against htslib, except parse region which requires …
Nov 21, 2014:
- 1:20 PM Changeset [3351] by
- make BamRead? compile with htslib. refs #794
Nov 20, 2014:
- 2:25 PM Changeset [3350] by
- Make configure htslib aware. Header detection changed to look for …
Nov 13, 2014:
- 4:59 AM Changeset [3349] by
- avoid having a std::set just to count number of jobs. refs #800
- 2:12 AM Changeset [3348] by
- Replace Scheduler::launch() with a function Scheduler::wait(). Before …
Nov 9, 2014:
- 7:46 AM Changeset [3347] by
- remove protected function Scheduler::Job::submit. refs #800.
Nov 6, 2014:
- 2:16 PM Changeset [3346] by
- first version of Scheduler class. refs #800.
- 1:30 PM Ticket #818 (SegmentSet::insert_merge(range)) closed by
- fixed: (In [3345]) new function SegmentSet::insert_merge(first, last). closes #818
- 1:30 PM Changeset [3345] by
- new function SegmentSet::insert_merge(first, last). closes #818
- 1:09 PM Changeset [3344] by
- new function SegmentSet::insert_merge with hint. refs #818
- 6:31 AM Changeset [3343] by
- bumping version to 0.12.3pre
- 6:26 AM Changeset [3342] by
- merge 0.12.2 into trunk
- 6:18 AM Milestone yat 0.12.2 completed
- bugfix release - unexpected CIGAR - QuantileNormalizer? segfaults if …
- 6:18 AM SubversionCheckout edited by
- (diff)
- 6:17 AM WikiStart edited by
- (diff)
- 5:58 AM Changeset [3341] by
- tagging version 0.12.2
- 5:39 AM Changeset [3340] by
- Preparing release 0.12.2
- 12:43 AM Ticket #820 (Unexpected CIGAR) closed by
- fixed: (In [3339]) Fix problem that Aligner::member_ is not cleared to 'none' …
- 12:43 AM Changeset [3339] by
- Fix problem that Aligner::member_ is not cleared to 'none' before …
Nov 5, 2014:
- 1:10 PM Ticket #819 (SmithWaterman::operator()(4)) closed by
- fixed: (In [3338]) closes #819. Fixes docs.
- 1:10 PM Changeset [3338] by
- closes #819. Fixes docs.
- 7:35 AM Ticket #820 (Unexpected CIGAR) created by
- I use Smithwaterman to align a query against ref as below with gap=2, …
Nov 4, 2014:
- 9:03 AM Ticket #819 (SmithWaterman::operator()(4)) created by
- operator is declared as […] but if I call it with […] I get …
Note: See TracTimeline
for information about the timeline view.
