Timeline



Nov 20, 2015:

7:34 AM Ticket #844 (adjust for API changes in GSL 2.0) closed by Peter
invalid: Not an API change but a regression in gsl_multifit_wlinear. The …
7:02 AM Ticket #850 (yat.pc should use htslib.pc) created by Peter
When building in htslib mode, the yat.pc looks like this: […] A …
6:47 AM Changeset [3440] by Peter
Bumping version to 0.13.1pre
6:41 AM Changeset [3439] by Peter
merge release 0.13 into trunk
6:12 AM Milestone yat 0.13 completed
The major focus of this release is to add support for htslib (#794) …
6:11 AM SubversionCheckout edited by Peter
(diff)
6:10 AM WikiStart edited by Peter
0.13 release (diff)
6:02 AM Changeset [3438] by Peter
tagging version 0.13
5:44 AM Changeset [3437] by Peter
update copyright years
5:37 AM Changeset [3436] by Peter
Preparing release 0.13
5:30 AM Changeset [3435] by Peter
lift up ticket #794 (support for htslib) in NEWS

Oct 28, 2015:

6:55 AM Ticket #849 (Segment equality) created by Peter
There is no operator== and operator!= for Segment. Segment doesn't …
2:31 AM Ticket #847 (ROC p_value; when is exact method used) closed by Peter
fixed: (In [3434]) closes #847
2:31 AM Changeset [3434] by Peter
closes #847

Oct 27, 2015:

6:40 AM Ticket #846 (ROC::p_value() returns value greater than 1) closed by Peter
fixed: (In [3433]) fixes #846
6:40 AM Changeset [3433] by Peter
fixes #846
1:23 AM Ticket #848 (class performing chi^2 test) created by Peter
Input could be a matrix calculating expected as in Fisher or …
1:05 AM Ticket #847 (ROC p_value; when is exact method used) created by Peter
Documentation says: If both number of positive samples, n_pos(void), …
12:34 AM Changeset [3432] by Peter
fix compilation error when --without-htslib

Oct 26, 2015:

9:37 AM Ticket #846 (ROC::p_value() returns value greater than 1) created by Peter
The area in my case is less than 0.5, and guess that is the problem. …
8:09 AM Changeset [3431] by Peter
revert r3426 and some cosmetic changes (refs #794)
6:21 AM Ticket #845 (handle GSL errors gracefully in test suite) created by Peter
When GSL errors occur in the test-suite, the default GSL error handler …
6:16 AM Ticket #844 (adjust for API changes in GSL 2.0) created by Peter
GSL is beta testing its next release, 2.0, and it seems like they have …

Oct 24, 2015:

3:41 AM Changeset [3430] by Peter
fix wiki formatting
3:38 AM Ticket #794 (support for htslib) closed by Peter
fixed: (In [3429]) mention in NEWS that YAT_HAVE_LIBBAM and YAT_BAM_HEADER …
3:38 AM Changeset [3429] by Peter
mention in NEWS that YAT_HAVE_LIBBAM and YAT_BAM_HEADER are not …
3:31 AM Changeset [3428] by Peter
avoid referring to deprecated option
3:21 AM Changeset [3427] by Peter
avoid long line, and fix typo
3:12 AM Changeset [3426] by Peter
#define YAT_HAVE_LIBBAM when linking against libbam. refs #794

Oct 22, 2015:

3:26 AM Ticket #843 (Binomial Confidence Interval) created by Peter
Given n trials and k successes what is the confidence interval of the …
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