Timeline



Mar 14, 2016:

12:50 AM Changeset [3481] by Peter
fix PP conditionals so code compiles against libbam

Mar 10, 2016:

3:16 AM Changeset [3480] by Peter
missing includes
2:28 AM Changeset [3479] by Peter
docs
2:28 AM Changeset [3478] by Peter
assert on memory failures
2:25 AM Ticket #861 (detect failures in BamHeader::text(string)) created by Peter
If allocations fail, the header should be pristine and an exception be …

Mar 9, 2016:

9:26 AM Changeset [3477] by Peter
add functionality to access which RG IDs that are present in a BamHeader?
6:57 AM Changeset [3476] by Peter
remove created fasta file with 'make clean'

Mar 8, 2016:

9:05 AM Ticket #859 (wrapper class around faidx_t) closed by Peter
fixed: (In [3475]) closes #859 New class handling Fasta files that have an …
9:05 AM Changeset [3475] by Peter
closes #859 New class handling Fasta files that have an index file …
1:21 AM Ticket #860 (omic::DNA is not thread safe) created by Peter
The DNA class contains static variables, which means there is a …

Mar 4, 2016:

9:48 AM Ticket #859 (wrapper class around faidx_t) created by Peter
faidx_t is a struct in htslib (and libbam) Create wrapper class or …
8:52 AM Changeset [3474] by Peter
no need to clean things we no longer create
8:44 AM Changeset [3473] by Peter
put back dirstamp dependency which was accidentally removed in …
6:49 AM Changeset [3472] by Peter
generate sorted bam file directly from unsorted sam file; skip …
4:57 AM Changeset [3471] by Peter
merge r3470 into trunk
3:55 AM Changeset [3470] by Peter
use new (from samtools 1) syntax for samtools sort; the old syntax has …

Feb 29, 2016:

2:55 AM Ticket #857 (RNG from negative hypergeometric distribution) closed by Peter
fixed: (In [3469]) New class for NegativeHyperGeometric?. closes #857. The …
2:55 AM Changeset [3469] by Peter
New class for NegativeHyperGeometric?. closes #857. The implementation …
12:43 AM Ticket #858 (A proxy class between std random distributions and GSL RNG) created by Peter
Boost provides many classes for random number distributions and they …

Feb 22, 2016:

12:21 AM Changeset [3468] by Peter
document that Fisher(bool) constructor (with argument) was introduced …
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