Timeline



Jun 21, 2016:

11:59 AM Ticket #864 (change behaviour of yat-config so duplicated flag is kept) created by Peter
yat-config has this somewhat unreadable code in the end […] …
7:28 AM Ticket #863 (boost thread not detected) closed by Peter
fixed: (In [3504]) fixes #863. add libboost_system before looking for …
7:28 AM Changeset [3504] by Peter
fixes #863. add libboost_system before looking for boost_thread.
6:54 AM Ticket #863 (boost thread not detected) created by Peter
Detection of boost thread fails with output […] the relevant part …
3:27 AM Changeset [3503] by Peter
It's confusing to have variable name 'boost_version' as it's not …

Jun 7, 2016:

3:32 AM Ticket #860 (omic::DNA is not thread safe) closed by Peter
fixed: (In [3502]) Avoid static variables. fixes #860.
3:32 AM Changeset [3502] by Peter
Avoid static variables. fixes #860.

May 31, 2016:

6:32 AM Changeset [3501] by Peter
remove training spaces

May 26, 2016:

4:41 AM Changeset [3500] by Peter
change README to reflect that we accept samtools v1.2 (again)

May 25, 2016:

12:44 PM Changeset [3499] by Peter
extend test. refs #803
12:43 PM Changeset [3498] by Peter
remove trailing spaces
6:01 AM Changeset [3497] by Peter
move tests for htslib and samtools into file 'm4/yat_check_htslib.m4' …

May 24, 2016:

2:21 AM Changeset [3496] by Peter
only use samtools executable, if samtools 1.3 (or newer) is available

May 23, 2016:

3:20 PM Changeset [3495] by Peter
copy change r3494 into trunk manually (as code is different in trunk …
3:13 PM Ticket #862 (samtools sort fails with samtools 1.2 and older) closed by Peter
fixed: (In [3494]) cater for samtools 1.2. fixes #862
3:13 PM Changeset [3494] by Peter
cater for samtools 1.2. fixes #862
1:23 PM Changeset [3493] by Jari Häkkinen
Relaxing test accuracy to pass test on my mac.
12:44 PM Changeset [3492] by Peter
mention Samtools in header
12:20 PM Changeset [3491] by Peter
use consistently 'false' to indicate samtools is missing (not 'no')

May 22, 2016:

11:23 AM Changeset [3490] by Peter
extend spaces for sort_index (refs #803).
11:22 AM Changeset [3489] by Peter
remove spaces
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