Timeline



Jan 28, 2017:

9:41 AM Ticket #881 (expression class for dgemv) created by Peter
Currently the expression classes are minimalistic that each class …
1:48 AM Ticket #880 (transpose(A) in matrix expression) created by Peter
In matrix expression it's expected that one can write something like …

Jan 27, 2017:

11:32 AM Changeset [3610] by Peter
negation operator for Vector and Matrix
9:09 AM Changeset [3609] by Peter
operator+= and operator-= for Matrix MatrixExpression?
8:58 AM Changeset [3608] by Peter
operator+= and operator-= for VectorMutable? and VectorExpression?
8:04 AM Changeset [3607] by Peter
fix compilation errors
6:37 AM Changeset [3606] by Peter
don't allow assignment of vector and matrix expressions
6:23 AM Ticket #836 (allow operator*(const Matrix&, const Matrix&)) closed by Peter
fixed: Matrix*Matrix is now implemented. I close this ticket and leave …
6:19 AM Changeset [3605] by Peter
A first go at implementing template expression in order to provide …

Jan 23, 2017:

11:36 AM Changeset [3604] by Peter
fix typos. refs #836
1:01 AM Changeset [3603] by Peter
tests for matrix expressions. refs #836

Jan 22, 2017:

2:36 PM Ticket #878 (implement move semantics conditionally) closed by Peter
fixed: (In [3602]) doc how to turn on cxx11 features. closes #878
2:36 PM Changeset [3602] by Peter
doc how to turn on cxx11 features. closes #878
2:16 PM Changeset [3601] by Peter
introduce two macros, YAT_WITH_CXX11 and YAT_WITHOUT_CXX11, very much …
1:33 PM Changeset [3600] by Peter
move constructor aand assignmnet for BamHeader?; refs #878
1:06 PM Ticket #879 (document BamHeader::read_group_iterator) closed by Peter
fixed: (In [3599]) document BamHeader::read_group_iterator. closes #879
1:06 PM Changeset [3599] by Peter
document BamHeader::read_group_iterator. closes #879
12:17 PM Ticket #834 (make_segment for utility::Segment) closed by Peter
fixed: (In [3598]) implement make_segment. closes #834
12:17 PM Changeset [3598] by Peter
implement make_segment. closes #834
5:47 AM Ticket #828 (try convert string to numeric type) closed by Peter
fixed: (In [3597]) closes #828, function convert_try
5:47 AM Changeset [3597] by Peter
closes #828, function convert_try

Jan 21, 2017:

3:25 PM Changeset [3596] by Peter
move constructor and assignment in MatrixWeighted?. Remove declaration …
2:39 PM Ticket #474 (create Vector from temporary VectorView fails) closed by Peter
fixed: (In [3595]) implicit conversion from VectorView? to VectorConstView?. …
2:39 PM Changeset [3595] by Peter
implicit conversion from VectorView? to VectorConstView?. closes #474
1:16 PM Changeset [3594] by Peter
uncomment test code that used to be problematic. refs #474

Jan 20, 2017:

7:31 AM Changeset [3593] by Peter
replace option --without-cxx11 with --enable-cxx11 and also change the …
3:41 AM Changeset [3592] by Peter
guard move assignment
3:19 AM Ticket #877 (Use atomic in double checked locking pattern) closed by Peter
fixed: (In [3591]) fixes #877 Generalize YAT_CXX_RVALUE into …
3:19 AM Changeset [3591] by Peter
fixes #877 Generalize YAT_CXX_RVALUE into YAT_CXX_TRY_CXX11 and use …
1:23 AM Changeset [3590] by Peter
change file name to more generic 'yat_cxx11.m4' (laying out the carpet …

Jan 19, 2017:

3:10 PM Changeset [3589] by Peter
move assignment for Vector; refs #878
3:02 PM Changeset [3588] by Peter
refs #878 Modify macro YAT_CHECK_HEADER so it adds …
1:44 PM Changeset [3587] by Peter
move constructor for vector; refs #878 and #474
12:19 PM Changeset [3586] by Peter
restore CXX to avoid multiple opt ammended
6:01 AM Changeset [3585] by Peter
move constructor and move assignment for utility::Matrix; refs #878
5:14 AM Changeset [3584] by Peter
remove include not needed
5:11 AM Changeset [3583] by Peter
move constructor and move assignment for omic::BamRead?; refs #878
4:44 AM Changeset [3582] by Peter
fix test failure, refs #878
2:46 AM Changeset [3581] by Peter
refs #878 Make configure try to turn on compiler switches (such as …

Jan 18, 2017:

6:32 AM Ticket #879 (document BamHeader::read_group_iterator) created by Peter
Mention in docs value_type and category of iterator.
1:23 AM Ticket #878 (implement move semantics conditionally) created by Peter
I wanna implement move semantics (constructor and assignment) for some …

Jan 16, 2017:

4:59 AM Changeset [3580] by Peter
bumping version to 0.14.1pre
4:54 AM Changeset [3579] by Peter
merge release 0.14 into trunk
4:23 AM Milestone yat 0.14 completed
- The concept 'Distance' now requires that operator() works on …
4:22 AM SubversionCheckout edited by Peter
release 0.14 (diff)
4:21 AM WikiStart edited by Peter
release 0.14 (diff)
4:12 AM Changeset [3578] by Peter
tagging version 0.14
3:47 AM Changeset [3577] by Peter
prepare release 0.14
3:39 AM Ticket #876 (RNG::instance is not thread safe) closed by Peter
fixed: atomic is left for the future (see ticket #877)
3:39 AM Ticket #877 (Use atomic in double checked locking pattern) created by Peter
related to ticket #876 As discussed in …

Jan 13, 2017:

12:15 AM Changeset [3576] by Peter
remove debug include
12:10 AM Changeset [3575] by Peter
update copyright years

Jan 12, 2017:

2:18 PM Changeset [3574] by Jari Häkkinen
Fixed GCC v6.2 compiler issues (yat is now c++14 compliant)
6:16 AM Ticket #861 (detect failures in BamHeader::text(string)) closed by Peter
fixed: (In [3573]) fixes #861; throw if allocation fails
6:16 AM Changeset [3573] by Peter
fixes #861; throw if allocation fails
4:01 AM Ticket #874 (qQuantileNormalizer with unweighted source and weighted destination) closed by Peter
fixed: (In [3572]) fixes #874
4:01 AM Changeset [3572] by Peter
fixes #874

Jan 10, 2017:

6:47 AM Ticket #875 (speed up weighted qQuantileNormalizer::normalizer) closed by Peter
fixed: (In [3571]) closes #875 With new version of sort_index (since yat …
6:47 AM Changeset [3571] by Peter
closes #875 With new version of sort_index (since yat 0.13) allows …

Jan 9, 2017:

4:46 AM Changeset [3570] by Peter
update copyright years
4:43 AM Changeset [3569] by Peter
std::iterator_traits<T>::value_type does not work on OSX when T is an …
3:16 AM Changeset [3568] by Peter
when test is SKIPped because of old samtools, mention it in log

Jan 8, 2017:

11:39 AM Changeset [3567] by Peter
refs #876 Implementing The Double-Checked Locking Pattern but without …
3:18 AM Ticket #876 (RNG::instance is not thread safe) created by Peter
This is actually the same as pointed out in ticket #568, but the …

Jan 5, 2017:

6:32 PM WikiStart edited by Jari Häkkinen
Added link to 0.14 API documentation (diff)

Jan 4, 2017:

2:28 AM Changeset [3566] by Peter
bumping version to 0.15pre
2:26 AM Changeset [3565] by Peter
New stable branch 0.14
2:23 AM Changeset [3564] by Peter
Prepare 0.14-stable branch
2:20 AM Changeset [3563] by Peter
bump VERSION to 0.13.2pre and fix a link in NEWS
2:16 AM Changeset [3562] by Peter
update copyright years
1:55 AM Changeset [3561] by Peter
Merged release 0.13.1 into trunk
1:33 AM Milestone yat 0.13.1 completed
Bugfix release
1:32 AM SubversionCheckout edited by Peter
release 0.13.1 (diff)
1:32 AM WikiStart edited by Peter
release 0.13.1 (diff)
1:29 AM Changeset [3560] by Peter
tagging version 0.13.1
1:12 AM Changeset [3559] by Peter
correct date format
1:08 AM Changeset [3558] by Peter
correct typo
12:54 AM Changeset [3557] by Peter
updating copyright statements
12:46 AM Changeset [3556] by Peter
Preparing release 0.13.1

Jan 3, 2017:

9:04 AM Ticket #803 (use new iterator concepts) closed by Peter
fixed
9:00 AM Changeset [3555] by Peter
fix indentation and avoid long lines
8:56 AM Changeset [3554] by Peter
remove ws
8:56 AM Changeset [3553] by Peter
reactivate concept assert
8:48 AM Changeset [3552] by Peter
remove ws
8:47 AM Changeset [3551] by Peter
improve docs
6:41 AM Changeset [3550] by Peter
Update copyright years. Happy New Year

Jan 1, 2017:

7:43 AM Ticket #843 (Binomial Confidence Interval) closed by Peter
wontfix: This functionality already exists in boost …
6:57 AM Changeset [3549] by Peter
improve docs English
6:55 AM Ticket #871 (Distance base class) closed by Peter
fixed
5:56 AM Ticket #873 (skip lvalue requirement in Distance concept) closed by Peter
fixed: (In [3548]) The concept 'Distance' now requires that operator() works …
5:56 AM Changeset [3548] by Peter
The concept 'Distance' now requires that operator() works on iterator …

Dec 30, 2016:

12:47 PM Changeset [3547] by Peter
refs #803; use boost iterator concepts in qQuantileNormalizer.

Dec 29, 2016:

11:24 AM Ticket #875 (speed up weighted qQuantileNormalizer::normalizer) created by Peter
related to tickets #535 and #536 There is a code block in weighted …
11:07 AM Ticket #874 (qQuantileNormalizer with unweighted source and weighted destination) created by Peter
The qQuantileNormalizer::operator has four cases: 1. unweighted …
2:28 AM Changeset [3546] by Peter
prefer using constructor rather empty construction + std::copy
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