Timeline



Nov 6, 2020:

3:00 AM Changeset [4020] by Peter
bump version to 0.18.1pre
2:55 AM Changeset [4019] by Peter
merge 0.18 into trunk
2:44 AM Milestone yat 0.18 completed
Building yat now requires a c++11 compiler (ticket #949). Building …
2:44 AM SubversionCheckout edited by Peter
(diff)
2:43 AM WikiStart edited by Peter
(diff)
2:42 AM WikiStart edited by Peter
release 0.18 (diff)
2:41 AM Changeset [4018] by Peter
tagging version 0.18
2:25 AM Changeset [4017] by Peter
correct date format
2:23 AM Changeset [4016] by Peter
updating copyright years
2:21 AM Changeset [4015] by Peter
Preparing release 0.18

Nov 3, 2020:

12:22 AM Ticket #968 (rvalue insert in SegmentTree) created by Peter
SegmentTree? and inherited classes have insert functions but no rvalue …

Oct 30, 2020:

4:03 AM Changeset [4014] by Peter
prefer std::shared_ptr over boost
3:14 AM Ticket #967 (vcf_file2.test seg faults) closed by Peter
wontfix: Here is the backtrace: […]
1:26 AM Ticket #967 (vcf_file2.test seg faults) created by Peter
On CentOS with GCC 7.5.5 and HTSLIB 1.10.2

Oct 27, 2020:

8:49 AM Changeset [4013] by Peter
fix test failure when srcdir was absolute path
8:47 AM Changeset [4012] by Peter
../$(scrdir) does not work when srcdir is an absolute path

Oct 22, 2020:

2:35 AM Ticket #966 (prefer std::shared_ptr in BamReadIterator) closed by Peter
fixed: In 4011: […]
2:35 AM Changeset [4011] by Peter
Use std smart pointers instead of boost. Prefer initialisation of …

Oct 20, 2020:

2:29 AM Ticket #966 (prefer std::shared_ptr in BamReadIterator) created by Peter
BamReadIterator uses boost::shared_ptr internally; prefer std::.

Oct 19, 2020:

4:33 AM Ticket #964 (move constructor and assignment for DiscreteGeneral) closed by Peter
fixed: In 4010: […]
4:33 AM Changeset [4010] by Peter
Implement move constructo and move-assignment operator for …
2:54 AM Ticket #965 (default constructor for DiscreteGeneral) closed by Peter
fixed: In 4009: […]
2:54 AM Changeset [4009] by Peter
closes #965; Default constructor for DiscreteGeneral?

Oct 18, 2020:

3:19 AM Ticket #965 (default constructor for DiscreteGeneral) created by Peter
My use case is in a class and I construct the histogram in the …
3:07 AM Ticket #964 (move constructor and assignment for DiscreteGeneral) created by Peter
The copy and assignment are non-trivial and move functionality would …

Oct 17, 2020:

1:10 PM Ticket #858 (A proxy class between std random distributions and GSL RNG) reopened by Peter
Keep this open as an idea.
1:09 PM Changeset [4008] by Peter
Remove Distribution class and its daughter classes. It used …

Oct 16, 2020:

2:27 AM Changeset [4007] by Peter
There was a typo that yat_result was first set to "non required" and …

Oct 15, 2020:

3:15 PM Changeset [4006] by Peter
fix bug that doxygen.config was not updated when set of input files …
2:50 PM Changeset [4005] by Peter
int8_t needs <cstdint> when sam.h isn't included
4:01 AM Changeset [4004] by Peter
add \since tag for new exception class invalid_argument
4:00 AM Ticket #962 (Aligner::Cigar(string) constructor) closed by Peter
fixed: In 4003: […]
4:00 AM Changeset [4003] by Peter
Add a constructor Aligner::Cigar(string) (closes #962) Add a function …

Oct 14, 2020:

7:14 AM Changeset [4002] by Peter
Creating a private branch for refactoring of KendallScore? (refs #710)

Oct 13, 2020:

11:13 AM WikiStart edited by Jari Häkkinen
(diff)

Oct 12, 2020:

2:34 AM Ticket #963 (Confidence interval for median (& other percentiles)) created by Peter
As described here https://www-users.york.ac.uk/~mb55/intro/cicent.htm
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